Sequence Similarity Clusters for the Entities in PDB 3E47

Entity #1 | Chains: A,O
Proteasome component Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 309 11
95 % 276 309 22 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 276 309 24
70 % 276 309 32
50 % 276 309 65
40 % 288 366 40
30 % 1764 2273 2
Entity #10 | Chains: J,X
Proteasome component C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 275 305 18
95 % 275 305 29 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 275 305 31
70 % 275 305 39
50 % 275 305 72
40 % 287 360 45
30 % 287 362 47
Entity #11 | Chains: K,Y
Proteasome component PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 172 182 74
95 % 235 247 59 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 235 247 62
70 % 282 312 26
50 % 282 316 61
40 % 282 316 76
30 % 288 339 29
Entity #12 | Chains: L,Z
Proteasome component C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 243 273 21
95 % 276 306 25 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 276 306 27
70 % 276 306 35
50 % 276 306 68
40 % 276 328 75
30 % 276 332 79
Entity #13 | Chains: 1,M
Proteasome component PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 306 15
95 % 276 306 27 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 276 306 29
70 % 276 306 37
50 % 276 306 69
40 % 276 306 85
30 % 276 306 89
Entity #14 | Chains: 2,N
Proteasome component PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 306 14
95 % 276 306 28 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 276 306 30
70 % 276 306 38
50 % 276 306 70
40 % 276 310 81
30 % 276 310 87
Entity #2 | Chains: B,P
Proteasome component Y13 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 309 9
95 % 276 309 19 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.3
PDBFlex
90 % 276 309 22
70 % 276 309 30
50 % 288 364 35
40 % 288 366 42
30 % 1765 2273 2
Entity #3 | Chains: C,Q
Proteasome component PRE6 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 309 12
95 % 276 309 24 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 276 309 26
70 % 276 309 34
50 % 288 363 36
40 % 295 393 17
30 % 1766 2273 2
Entity #4 | Chains: D,R
Proteasome component PUP2 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 274 308 13
95 % 275 309 23 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 276 310 21
70 % 276 310 29
50 % 288 365 34
40 % 288 365 43
30 % 1767 2273 2
Entity #5 | Chains: E,S
Proteasome component PRE5 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 274 307 17
95 % 276 309 21 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 276 309 25
70 % 276 309 33
50 % 276 309 67
40 % 276 309 83
30 % 1768 2273 2
Entity #6 | Chains: F,T
Proteasome component C1 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 45 462
95 % 35 45 624 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 35 45 654
70 % 35 45 691
50 % 47 97 311
40 % 47 99 312
30 % 1769 2273 2
Entity #7 | Chains: G,U
Proteasome component C7-alpha protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 309 10
95 % 276 309 20 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 276 309 23
70 % 276 309 31
50 % 288 361 38
40 % 288 367 41
30 % 1770 2273 2
Entity #8 | Chains: H,V
Proteasome component PUP1 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 228 240 41
95 % 255 285 33 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 266 296 34
70 % 266 296 42
50 % 288 339 53
40 % 288 339 64
30 % 288 339 66
Entity #9 | Chains: I,W
Proteasome component PUP3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 306 16
95 % 276 306 26 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 276 306 28
70 % 276 306 36
50 % 288 357 39
40 % 288 363 44
30 % 288 363 46

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures