Sequence Similarity Clusters for the Entities in PDB 3DVG

Entity #1 | Chains: A
Human IgG1 fab fragment light chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60831
95 % 105 197 78 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 283 508 4
70 % 1392 2273 2
50 % 1747 2886 2
40 % 1747 2886 2
30 % 3547 5855 1
Entity #2 | Chains: B
Human IgG1 fab fragment heavy chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60830
95 % 1 2 28445 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 187 298 35
70 % 1687 2784 1
50 % 1778 2927 1
40 % 1778 2927 1
30 % 3548 5855 1
Entity #3 | Chains: X
Ubiquitin D77 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 215 377 4
95 % 266 467 6 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.2
PDBFlex
90 % 274 478 7
70 % 303 523 10
50 % 305 536 11
40 % 305 540 16
30 % 315 556 21
Entity #4 | Chains: Y
Ubiquitin protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 20 1399
95 % 267 467 6 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.2
PDBFlex
90 % 275 478 7
70 % 304 523 10
50 % 306 536 11
40 % 306 540 16
30 % 316 556 21

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures