Sequence Similarity Clusters for the Entities in PDB 3DMM

Entity #1 | Chains: A
H-2 class I histocompatibility antigen, D-D alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 5380
95 % 12 14 3457 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.7
PDBFlex
90 % 12 14 3385
70 % 702 800 6
50 % 704 805 8
40 % 746 849 9
30 % 755 872 12
Entity #2 | Chains: B
Beta-2 microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 95 128 192
95 % 209 271 68 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 209 271 74
70 % 888 1051 4
50 % 904 1075 4
40 % 904 1075 4
30 % 904 1075 7
Entity #3 | Chains: P
Synthetic peptide protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: C
T-cell surface glycoprotein CD8 alpha chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58934
95 % 1 1 46029
90 % 1 1 43665
70 % 1 1 38504
50 % 1 1 33357
40 % 1 1 30164
30 % 1 1 26655
Entity #5 | Chains: D
T-cell surface glycoprotein CD8 beta chain protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62621
95 % 1 1 46030
90 % 1 1 43666
70 % 1 1 38505
50 % 1 1 33358
40 % 1 1 30165
30 % 1 1 26656

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures