Sequence Similarity Clusters for the Entities in PDB 3DAC

Entity #1 | Chains: A,M
Mdm4 protein protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50287
95 % 1 3 11497 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 3 11381
70 % 1 3 10868
50 % 1 3 9960
40 % 1 3 9407
30 % 1 3 8685
Entity #2 | Chains: B,P
Cellular tumor antigen p53 protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46406
95 % 1 1 35922
90 % 1 1 34390
70 % 1 1 30701
50 % 1 1 28354
40 % 1 1 22089
30 % 1 1 21639

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3DAC 1 A, M Mdm4 protein UNP residues 15-129 7955
2 2Z5T 1 M, N, O Mdm4 protein SWIB domain 7955
3 2Z5S 1 M, N, O Mdm4 protein SWIB domain 7955