Sequence Similarity Clusters for the Entities in PDB 3DAC

Entity #1 | Chains: A,M
Mdm4 protein protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53821
95 % 1 3 11496 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 3 11349
70 % 1 3 10861
50 % 1 3 9954
40 % 1 3 9389
30 % 1 3 8690
Entity #2 | Chains: B,P
Cellular tumor antigen p53 protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37750
95 % 1 1 38274
90 % 1 1 36545
70 % 1 1 27602
50 % 1 1 28312
40 % 1 1 24319
30 % 1 1 22782

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3DAC 1 A, M Mdm4 protein UNP residues 15-129 7955
2 2Z5T 1 M, N, O Mdm4 protein SWIB domain 7955
3 2Z5S 1 M, N, O Mdm4 protein SWIB domain 7955