Sequence Similarity Clusters for the Entities in PDB 3D9A

Entity #1 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 86 767 3
95 % 86 820 5 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 88 837 5
70 % 91 844 11
50 % 94 1070 9
40 % 94 1076 10
30 % 95 1105 15
Entity #2 | Chains: L
Light Chain of HyHel10 Antibody Fragment (Fab) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 12056
95 % 1 32 1600 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.8
PDBFlex
90 % 1 42 1198
70 % 5 2368 2
50 % 5 3003 2
40 % 5 3003 2
30 % 9 6095 1
Entity #3 | Chains: H
Heavy Chain of HyHel10 Antibody Fragment (Fab) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 87168
95 % 1 4 11760 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 1 14 3254
70 % 5 2903 1
50 % 5 3048 1
40 % 5 3048 1
30 % 10 6095 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures