Sequence Similarity Clusters for the Entities in PDB 3D48

Entity #1 | Chains: P
Prolactin protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 21509
95 % 8 12 6884 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 8 12 7270
70 % 8 12 6825
50 % 9 13 5976
40 % 9 13 5967
30 % 9 13 5551
Entity #2 | Chains: R
Prolactin receptor protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 9799
95 % 8 10 8243 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 8 10 8182
70 % 9 13 4854
50 % 9 13 4717
40 % 9 13 4610
30 % 9 13 4473

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures