Sequence Similarity Clusters for the Entities in PDB 3D0Y

Entity #1 | Chains: A
Protein S100-B protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 1365
95 % 8 51 620 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.7
PDBFlex
90 % 8 51 650
70 % 8 51 688
50 % 11 94 296
40 % 13 107 215
30 % 13 107 223
Entity #2 | Chains: B
Protein S100-B protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 17 1365
95 % 9 51 620 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.7
PDBFlex
90 % 9 51 650
70 % 9 51 688
50 % 12 94 296
40 % 14 107 215
30 % 14 107 223

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4PE0 1 A, X Protein S100-B 9913
2 1K8U 1 A S100A6 9606
3 5ER5 1 A Protein S100-B 9913
4 5D7F 1 A, B Protein S100-B 9606
5 3RM1 1 A Protein S100-B 9913
6 4CFQ 1 A, B, C, D PROTEIN S100-A4 RESIDUES 1-88 9606
7 3CZT 1 X Protein S100-B 9606
8 1K96 1 A S100A6 9606
9 3IQO 1 A, B Protein S100-B 9913
10 5DKN 1 A Protein S100-B 9913
11 3D0Y 1 A Protein S100-B 9606
12 3D0Y 2 B Protein S100-B 9606
13 4ETO 1 A, B Protein S100-A4 UNP residues 1-93 9606
14 4PE7 1 A Protein S100-B 9913
15 2Q91 1 A, B S100A4 Metastasis Factor 9606
16 5DKQ 1 A Protein S100-B 9913
17 4PE1 1 A, B Protein S100-B 9913
18 4FQO 1 A Protein S100-B 9913
19 3D10 1 A, B Protein S100-B 9606
20 1K9K 1 A, B S100A6 9606
21 5ER4 1 X Protein S100-B 9913
22 5DKR 1 A, B Protein S100-B 9913
23 3LK1 1 A Protein S100-B 9913
24 2H61 1 A, B, E, F, H Protein S100-B MET at the N-terminus 9606
25 2H61 2 C, D, G Protein S100-B FME at the N-terminus 9606
26 1K9P 1 A S100A6 9606
27 4PDZ 1 A, B Protein S100-B 9913
28 3CR5 1 X Protein S100-B 9913
29 3LLE 1 A, B Protein S100-B 9913
30 2Y5I 1 A, B, C, D, E, F S100 CALCIUM BINDING PROTEIN Z 7955
31 3GK4 1 X Protein S100-B 9913
32 3CR2 1 A Protein S100-B 9913
33 1MHO 1 A S-100 PROTEIN BETA CHAIN 9913
34 3RLZ 1 A, B Protein S100-B 9913
35 1J55 1 A S-100P PROTEIN 9606
36 3GK2 1 A Protein S100-B 9913
37 3IQQ 1 A Protein S100-B 9913
38 3HCM 1 A, B Protein S100-B 9606
39 3GK1 1 A Protein S100-B 9913
40 5CSI 1 A, B Protein S100-B 9606
41 3CR4 1 X Protein S100-B 9913
42 3LK0 1 A, B, C, D Protein S100-B 9913
43 4P2Y 2 B Protein S100-A6 10090
44 4PE4 1 A, X Protein S100-B 9913
45 3CGA 1 A, B Protein S100-A4 9606
46 3KO0 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T Protein S100-A4 9606
47 5HYD 1 A, B, C, D Protein S100-Z 9606
48 4YBH 2 B Protein S100-A6 9606
49 4HSZ 1 A, B, C, D Protein S100-A4 UNP residues 1-93 9606
50 4XYN 2 A, B, C, D Protein S100-B 9606
51 5CSF 1 A, B Protein S100-B 9606
52 5K89 1 A, C, H Protein S100-A1 9606
53 5CSJ 1 A, B Protein S100-B 9606
54 4DIR 1 A, B Protein S100-A5 9606
55 3M0W 1 A, B, C, D, E, F, G, H, I, J Protein S100-A4 9606
56 5CSN 1 A, B Protein S100-B 9606
57 2MJW 2 B, D Protein S100-P UNP RESIDUES 1-94 9606
58 2M49 2 B, D Protein S100-B 9606
59 2M3W 1 A, B Protein S100-A1 9606
60 2M1K 1 B, D Protein S100-A6 9606
61 2LUX 1 A, B Protein S100-A1 9606
62 2LP2 1 A, B Protein S100-A1 9606
63 2LP3 1 A, B Protein S100-A1 9606
64 2LLS 1 A, B Protein S100-A1 9606
65 2LLT 1 A, B Protein S100-A1 9606
66 2LLU 1 A, B Protein S100-A1 9606
67 2LHL 1 A, B Protein S100-A1 9606
68 2L0P 1 A, B S100 calcium binding protein A1 UNP residues 54-147 9606
69 2KBM 2 A, B Protein S100-A1 10116
70 2KAX 1 A, B Protein S100-A5 9606
71 2KAY 1 A, B Protein S100-A5 9606
72 2K7O 1 A, B Protein S100-B 10116
73 2K2F 2 A, B Protein S100-A1 10116
74 2JTT 1 A, B Protein S100-A6 9986
75 2JPT 1 A, B Protein S100-A1 9913
76 2PRU 1 A, B Protein S100-B 9606
77 1ZFS 1 A, B S-100 protein, alpha chain 10116
78 1XYD 1 A, B S-100 protein, beta chain 10116
79 1PSB 1 A, B S-100 protein, beta chain 9913
80 1OZO 1 A, B S-100P protein 9606
81 1MWN 1 A, B S-100 protein, beta chain 10116
82 1MQ1 1 A, B S-100 protein, beta chain 9606
83 1M31 1 A, B Placental calcium-binding protein 9606
84 1K2H 1 A, B S-100 protein, alpha chain 10116
85 1JWD 1 A, B Calcyclin 9986
86 1DT7 1 A, B S100 CALCIUM-BINDING PROTEIN BETA CHAIN 10116
87 2CNP 1 A, B CALCYCLIN 9986
88 1B4C 1 A, B PROTEIN (S-100 PROTEIN, BETA CHAIN) S100B IS A HOMODIMER OF S100BETA SUBUNITS 10116
89 1A03 1 A, B CALCYCLIN (RABBIT, CA2+) RABBIT, CA2+ 9986
90 1UWO 1 A, B S100B 9606
91 1QLK 1 A, B S-100 PROTEIN SUBUNITS A AND B 10116
92 1CFP 1 A, B S100B 9913
93 1SYM 1 A, B S100B SYMMETRIC DIMER OF APO-S100BETA SUBUNITS, JOINED BY NONCOVALENT INTERACTION AT THE DIMER INTERFACE 10116
94 1CNP 1 A, B CALCYCLIN (RABBIT, APO) PH 7.0, 300 K 9986