Sequence Similarity Clusters for the Entities in PDB 3D0Y

Entity #1 | Chains: A
Protein S100-B protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 1365
95 % 8 51 620 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.7
PDBFlex
90 % 8 51 650
70 % 8 51 688
50 % 11 94 296
40 % 13 107 215
30 % 13 107 223
Entity #2 | Chains: B
Protein S100-B protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 17 1365
95 % 9 51 620 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.7
PDBFlex
90 % 9 51 650
70 % 9 51 688
50 % 12 94 296
40 % 14 107 215
30 % 14 107 223

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4PE0 1 A, X Protein S100-B 9913
2 5ER5 1 A Protein S100-B 9913
3 5D7F 1 A, B Protein S100-B 9606
4 3RM1 1 A Protein S100-B 9913
5 3CZT 1 X Protein S100-B 9606
6 3IQO 1 A, B Protein S100-B 9913
7 5DKN 1 A Protein S100-B 9913
8 3D0Y 1 A Protein S100-B 9606
9 3D0Y 2 B Protein S100-B 9606
10 4PE7 1 A Protein S100-B 9913
11 5DKQ 1 A Protein S100-B 9913
12 4PE1 1 A, B Protein S100-B 9913
13 4FQO 1 A Protein S100-B 9913
14 3D10 1 A, B Protein S100-B 9606
15 5ER4 1 X Protein S100-B 9913
16 5DKR 1 A, B Protein S100-B 9913
17 3LK1 1 A Protein S100-B 9913
18 2H61 1 A, B, E, F, H Protein S100-B MET at the N-terminus 9606
19 2H61 2 C, D, G Protein S100-B FME at the N-terminus 9606
20 4PDZ 1 A, B Protein S100-B 9913
21 3CR5 1 X Protein S100-B 9913
22 3LLE 1 A, B Protein S100-B 9913
23 3GK4 1 X Protein S100-B 9913
24 3CR2 1 A Protein S100-B 9913
25 1MHO 1 A S-100 PROTEIN BETA CHAIN 9913
26 3RLZ 1 A, B Protein S100-B 9913
27 3GK2 1 A Protein S100-B 9913
28 3IQQ 1 A Protein S100-B 9913
29 3HCM 1 A, B Protein S100-B 9606
30 3GK1 1 A Protein S100-B 9913
31 5CSI 1 A, B Protein S100-B 9606
32 3CR4 1 X Protein S100-B 9913
33 3LK0 1 A, B, C, D Protein S100-B 9913
34 4PE4 1 A, X Protein S100-B 9913
35 4XYN 2 A, B, C, D Protein S100-B 9606
36 5CSF 1 A, B Protein S100-B 9606
37 5CSJ 1 A, B Protein S100-B 9606
38 5CSN 1 A, B Protein S100-B 9606
39 2M49 2 B, D Protein S100-B 9606
40 2K7O 1 A, B Protein S100-B 10116
41 2PRU 1 A, B Protein S100-B 9606
42 1XYD 1 A, B S-100 protein, beta chain 10116
43 1PSB 1 A, B S-100 protein, beta chain 9913
44 1MWN 1 A, B S-100 protein, beta chain 10116
45 1MQ1 1 A, B S-100 protein, beta chain 9606
46 1DT7 1 A, B S100 CALCIUM-BINDING PROTEIN BETA CHAIN 10116
47 1B4C 1 A, B PROTEIN (S-100 PROTEIN, BETA CHAIN) S100B IS A HOMODIMER OF S100BETA SUBUNITS 10116
48 1UWO 1 A, B S100B 9606
49 1QLK 1 A, B S-100 PROTEIN SUBUNITS A AND B 10116
50 1CFP 1 A, B S100B 9913
51 1SYM 1 A, B S100B SYMMETRIC DIMER OF APO-S100BETA SUBUNITS, JOINED BY NONCOVALENT INTERACTION AT THE DIMER INTERFACE 10116