Sequence Similarity Clusters for the Entities in PDB 3D0Y

Entity #1 | Chains: A
Protein S100-B protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 1365
95 % 8 51 620 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.7
PDBFlex
90 % 8 51 650
70 % 8 51 688
50 % 11 94 296
40 % 13 107 215
30 % 13 107 223
Entity #2 | Chains: B
Protein S100-B protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 17 1365
95 % 9 51 620 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.7
PDBFlex
90 % 9 51 650
70 % 9 51 688
50 % 12 94 296
40 % 14 107 215
30 % 14 107 223

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4PE0 1 A, X Protein S100-B 9913
2 1K8U 1 A S100A6 9606
3 5ER5 1 A Protein S100-B 9913
4 5D7F 1 A, B Protein S100-B 9606
5 3RM1 1 A Protein S100-B 9913
6 4CFQ 1 A, B, C, D PROTEIN S100-A4 RESIDUES 1-88 9606
7 3CZT 1 X Protein S100-B 9606
8 3NSL 1 A, B, C, D, E, F Protein S100-A3 9606
9 3NSO 1 A, B Protein S100-A3 9606
10 1K96 1 A S100A6 9606
11 3IQO 1 A, B Protein S100-B 9913
12 5DKN 1 A Protein S100-B 9913
13 3D0Y 1 A Protein S100-B 9606
14 3D0Y 2 B Protein S100-B 9606
15 3NSK 1 A, B Protein S100-A3 9606
16 4ETO 1 A, B Protein S100-A4 UNP residues 1-93 9606
17 4PE7 1 A Protein S100-B 9913
18 2Q91 1 A, B S100A4 Metastasis Factor 9606
19 5DKQ 1 A Protein S100-B 9913
20 4PE1 1 A, B Protein S100-B 9913
21 4FQO 1 A Protein S100-B 9913
22 2WCE 1 A, B PROTEIN S100-A12 RESIDUES 2-92 9606
23 1KSO 1 A, B S100 CALCIUM-BINDING PROTEIN A3 9606
24 3D10 1 A, B Protein S100-B 9606
25 1K9K 1 A, B S100A6 9606
26 5ER4 1 X Protein S100-B 9913
27 5DKR 1 A, B Protein S100-B 9913
28 3LK1 1 A Protein S100-B 9913
29 2WC8 1 A, B, C, D PROTEIN S100-A12 RESIDUES 2-92 9606
30 2H61 1 A, B, E, F, H Protein S100-B MET at the N-terminus 9606
31 2H61 2 C, D, G Protein S100-B FME at the N-terminus 9606
32 1K9P 1 A S100A6 9606
33 2WCB 1 A, B PROTEIN S100-A12 RESIDUES 2-92 9606
34 4PDZ 1 A, B Protein S100-B 9913
35 3CR5 1 X Protein S100-B 9913
36 3LLE 1 A, B Protein S100-B 9913
37 1E8A 1 A, B S100A12 9606
38 2Y5I 1 A, B, C, D, E, F S100 CALCIUM BINDING PROTEIN Z 7955
39 3GK4 1 X Protein S100-B 9913
40 3CR2 1 A Protein S100-B 9913
41 1MHO 1 A S-100 PROTEIN BETA CHAIN 9913
42 3RLZ 1 A, B Protein S100-B 9913
43 1J55 1 A S-100P PROTEIN 9606
44 3GK2 1 A Protein S100-B 9913
45 3IQQ 1 A Protein S100-B 9913
46 3HCM 1 A, B Protein S100-B 9606
47 1ODB 1 A, B, C, D, E, F CALGRANULIN C CA2+ AND CU2+ BOUND FORM 9606
48 3GK1 1 A Protein S100-B 9913
49 5CSI 1 A, B Protein S100-B 9606
50 3NSI 1 A, B Protein S100-A3 9606
51 3CR4 1 X Protein S100-B 9913
52 3LK0 1 A, B, C, D Protein S100-B 9913
53 4P2Y 2 B Protein S100-A6 10090
54 4PE4 1 A, X Protein S100-B 9913
55 3CGA 1 A, B Protein S100-A4 9606
56 3KO0 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T Protein S100-A4 9606
57 5HYD 1 A, B, C, D Protein S100-Z 9606
58 4YBH 2 B Protein S100-A6 9606
59 4HSZ 1 A, B, C, D Protein S100-A4 UNP residues 1-93 9606
60 4XYN 2 A, B, C, D Protein S100-B 9606
61 5CSF 1 A, B Protein S100-B 9606
62 5K89 1 A, C, H Protein S100-A1 9606
63 5CSJ 1 A, B Protein S100-B 9606
64 1GQM 1 A, B, C, D, E, F, G, H, I, J, K, L CALGRANULIN C 9606
65 4DIR 1 A, B Protein S100-A5 9606
66 2WCF 1 A, B, C, D, E, F PROTEIN S100-A12 RESIDUES 2-92 9606
67 3M0W 1 A, B, C, D, E, F, G, H, I, J Protein S100-A4 9606
68 5CSN 1 A, B Protein S100-B 9606
69 2MJW 2 B, D Protein S100-P UNP RESIDUES 1-94 9606
70 2M9G 1 A, B Protein S100-A12 9606
71 2M49 2 B, D Protein S100-B 9606
72 2M3W 1 A, B Protein S100-A1 9606
73 2M1K 1 B, D Protein S100-A6 9606
74 2LUX 1 A, B Protein S100-A1 9606
75 2LP2 1 A, B Protein S100-A1 9606
76 2LP3 1 A, B Protein S100-A1 9606
77 2LLS 1 A, B Protein S100-A1 9606
78 2LLT 1 A, B Protein S100-A1 9606
79 2LLU 1 A, B Protein S100-A1 9606
80 2LHL 1 A, B Protein S100-A1 9606
81 2L0P 1 A, B S100 calcium binding protein A1 UNP residues 54-147 9606
82 2KBM 2 A, B Protein S100-A1 10116
83 2KAX 1 A, B Protein S100-A5 9606
84 2KAY 1 A, B Protein S100-A5 9606
85 2K7O 1 A, B Protein S100-B 10116
86 2K2F 2 A, B Protein S100-A1 10116
87 2JTT 1 A, B Protein S100-A6 9986
88 2JPT 1 A, B Protein S100-A1 9913
89 2PRU 1 A, B Protein S100-B 9606
90 1ZFS 1 A, B S-100 protein, alpha chain 10116
91 1XYD 1 A, B S-100 protein, beta chain 10116
92 1PSB 1 A, B S-100 protein, beta chain 9913
93 1OZO 1 A, B S-100P protein 9606
94 1MWN 1 A, B S-100 protein, beta chain 10116
95 1MQ1 1 A, B S-100 protein, beta chain 9606
96 1M31 1 A, B Placental calcium-binding protein 9606
97 1K2H 1 A, B S-100 protein, alpha chain 10116
98 1JWD 1 A, B Calcyclin 9986
99 1DT7 1 A, B S100 CALCIUM-BINDING PROTEIN BETA CHAIN 10116
100 2CNP 1 A, B CALCYCLIN 9986
101 1B4C 1 A, B PROTEIN (S-100 PROTEIN, BETA CHAIN) S100B IS A HOMODIMER OF S100BETA SUBUNITS 10116
102 1A03 1 A, B CALCYCLIN (RABBIT, CA2+) RABBIT, CA2+ 9986
103 1UWO 1 A, B S100B 9606
104 1QLK 1 A, B S-100 PROTEIN SUBUNITS A AND B 10116
105 1CFP 1 A, B S100B 9913
106 1SYM 1 A, B S100B SYMMETRIC DIMER OF APO-S100BETA SUBUNITS, JOINED BY NONCOVALENT INTERACTION AT THE DIMER INTERFACE 10116
107 1CNP 1 A, B CALCYCLIN (RABBIT, APO) PH 7.0, 300 K 9986