Sequence Similarity Clusters for the Entities in PDB 3CYY

Entity #1 | Chains: A,B
Tight junction protein ZO-1 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41466
95 % 1 2 33060 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 31707
70 % 3 5 8009
50 % 3 5 7509
40 % 3 5 7270
30 % 3 5 6810
Entity #2 | Chains: C,D
peptide from Gap junction alpha-1 protein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures