Sequence Similarity Clusters for the Entities in PDB 3CW2

Entity #1 | Chains: A,B,E,F
Translation initiation factor 2 subunit gamma protein, length: 415 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 18 1901
95 % 24 32 1424 Flexibility: Low
Max RMSD: 7.9, Avg RMSD: 2.6
PDBFlex
90 % 24 32 1453
70 % 24 32 1484
50 % 30 40 1271
40 % 30 42 1262
30 % 30 42 1305
Entity #2 | Chains: C,D,G,H
Translation initiation factor 2 subunit alpha protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 9712
95 % 1 5 10347 Flexibility: Medium
Max RMSD: 14.9, Avg RMSD: 6.8
PDBFlex
90 % 1 5 10243
70 % 1 5 9902
50 % 1 5 9201
40 % 1 5 8786
30 % 2 11 5148
Entity #3 | Chains: K,L,M,N
Translation initiation factor 2 subunit beta protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 9256
95 % 1 6 9592 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 5.4
PDBFlex
90 % 1 6 9498
70 % 1 6 9206
50 % 1 6 8565
40 % 1 6 8233
30 % 1 11 5254

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures