Sequence Similarity Clusters for the Entities in PDB 3CVH

Entity #1 | Chains: A,M
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 49 561
95 % 58 66 537 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 58 66 561
70 % 766 836 6
50 % 775 850 7
40 % 829 907 8
30 % 844 932 13
Entity #2 | Chains: B,N
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 127 144 114
95 % 235 273 68 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 235 273 76
70 % 996 1115 4
50 % 1013 1139 3
40 % 1013 1139 4
30 % 1013 1139 9
Entity #3 | Chains: C,O
Ovalbumin protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: H,Q
25-D1.16 heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35456
95 % 2 2 30407 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.2
PDBFlex
90 % 5 5 12592
70 % 2148 3023 1
50 % 4500 6352 1
40 % 4500 6352 1
30 % 4534 6398 1
Entity #5 | Chains: L,R
25-D1.16 light chain protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35455
95 % 4 8 8274 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 5 15 3460
70 % 1784 2457 2
50 % 4501 6352 1
40 % 4501 6352 1
30 % 4535 6398 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures