Sequence Similarity Clusters for the Entities in PDB 3CME

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 47 1041
95 % 48 68 889 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 48 68 925
70 % 48 68 971
50 % 48 70 976
40 % 50 250 194
30 % 50 250 203
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 74 595
95 % 48 74 806 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 48 74 843
70 % 48 74 878
50 % 48 74 911
40 % 48 74 947
30 % 48 75 978
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 44 1138
95 % 48 68 896 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 48 68 935
70 % 48 68 979
50 % 48 70 984
40 % 48 70 1022
30 % 48 70 1071
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 74 606
95 % 48 74 812 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 48 74 857
70 % 48 74 886
50 % 48 74 914
40 % 48 74 957
30 % 48 74 1006
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 23 2669
95 % 41 47 1427 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 41 47 1454
70 % 47 67 1008
50 % 48 70 968
40 % 48 70 1001
30 % 48 70 1048
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 74 600
95 % 48 74 805 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 48 74 840
70 % 48 74 874
50 % 48 76 882
40 % 48 76 919
30 % 48 76 962
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 68 664
95 % 48 68 920 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 48 68 963
70 % 48 68 994
50 % 48 70 980
40 % 48 70 1019
30 % 48 70 1062
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 47 1042
95 % 48 68 891 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 48 68 930
70 % 48 68 974
50 % 48 68 1011
40 % 48 70 1000
30 % 48 75 988
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 68 675
95 % 48 68 919 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 48 68 928
70 % 48 68 992
50 % 48 68 1021
40 % 48 68 1064
30 % 48 68 1111
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 67 683
95 % 48 68 909 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 48 68 952
70 % 48 68 993
50 % 48 68 1023
40 % 48 68 1071
30 % 48 70 1045
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 74 602
95 % 48 74 809 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 48 74 847
70 % 48 74 881
50 % 48 77 877
40 % 48 79 879
30 % 48 79 924
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 67 688
95 % 48 74 804 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 48 74 855
70 % 48 74 883
50 % 48 74 908
40 % 48 76 918
30 % 48 74 1003
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 74 604
95 % 48 74 814 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 48 74 848
70 % 48 74 887
50 % 48 74 916
40 % 48 74 953
30 % 48 78 944
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 70 640
95 % 45 70 864 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 45 70 898
70 % 45 70 937
50 % 45 70 966
40 % 45 70 999
30 % 45 70 1053
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 74 598
95 % 48 74 813 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 48 74 852
70 % 48 74 885
50 % 48 74 915
40 % 48 74 952
30 % 48 74 1002
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 68 666
95 % 48 68 921 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 48 68 964
70 % 48 68 1002
50 % 48 68 1032
40 % 48 70 1021
30 % 48 70 1070
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 64 720
95 % 45 64 992 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 45 64 1033
70 % 45 64 1061
50 % 45 64 1087
40 % 45 64 1120
30 % 45 64 1164
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 63 748
95 % 44 63 1022 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 44 63 1062
70 % 44 63 1087
50 % 44 63 1124
40 % 44 63 1155
30 % 44 63 1198
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 17 3944
95 % 15 17 4658 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 15 17 4717
70 % 15 17 4667
50 % 15 17 4541
40 % 15 17 4449
30 % 15 17 4324
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 68 671
95 % 48 68 895 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 48 68 933
70 % 48 68 978
50 % 48 69 988
40 % 48 69 1025
30 % 48 69 1073
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 47 1052
95 % 48 68 899 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 48 68 939
70 % 48 68 986
50 % 48 68 1014
40 % 48 68 1056
30 % 48 68 1105
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 68 657
95 % 48 68 897 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 48 68 936
70 % 48 68 981
50 % 48 68 1015
40 % 48 70 1003
30 % 48 70 1050
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 23 2671
95 % 48 74 820 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 48 74 858
70 % 48 74 895
50 % 48 74 923
40 % 48 76 928
30 % 49 78 936
Entity #30 | Chains: 0
50S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #32 | Chains: 5
RNA (5'-R(*C*CP*A)-3') rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #33 | Chains: 6
RNA (5'-R(*CP*CP*(8AN))-3') rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 74 594
95 % 48 74 817 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 48 74 842
70 % 48 74 891
50 % 48 74 919
40 % 48 76 913
30 % 48 76 964
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 68 662
95 % 48 68 915 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 48 68 957
70 % 48 68 997
50 % 48 68 1027
40 % 48 70 1016
30 % 50 258 198
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 47 1040
95 % 41 47 1435 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 48 68 923
70 % 48 68 970
50 % 70 111 420
40 % 70 111 436
30 % 70 111 459
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 44 1115
95 % 45 64 1001 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 45 64 1032
70 % 45 64 1059
50 % 45 64 1094
40 % 45 64 1125
30 % 45 64 1172
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 47 1050
95 % 41 47 1432 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 41 47 1460
70 % 41 47 1497
50 % 48 68 1031
40 % 48 72 970
30 % 48 72 1026
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 42 1208
95 % 38 42 1591 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 38 42 1627
70 % 38 42 1664
50 % 40 46 1488
40 % 40 46 1526
30 % 40 46 1567

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures