Sequence Similarity Clusters for the Entities in PDB 3BM3

Entity #1 | Chains: C
DNA (5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
PspGI restriction endonuclease protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46878
95 % 1 1 36356 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 34726
70 % 1 1 30979
50 % 1 1 27051
40 % 1 1 24622
30 % 1 1 21885

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures