Sequence Similarity Clusters for the Entities in PDB 3BAE

Entity #1 | Chains: L
WO2 IgG2a Fab fragment Light Chain Kappa protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 83244
95 % 15 164 166 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 17 174 155
70 % 126 2399 2
50 % 157 3045 2
40 % 157 3045 2
30 % 330 6183 1
Entity #2 | Chains: H
WO2 IgG2a Fab fragment Heavy Chain protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 20151
95 % 3 5 13356 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.3
PDBFlex
90 % 3 5 13181
70 % 156 2943 1
50 % 168 3094 1
40 % 168 3094 1
30 % 331 6183 1
Entity #3 | Chains: A
Amyloid Beta Peptide protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 24578
95 % 1 6 15490
90 % 1 6 13234
70 % 1 7 11992
50 % 1 7 11076
40 % 1 7 10439
30 % 1 7 9549

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures