Sequence Similarity Clusters for the Entities in PDB 3B9K

Entity #1 | Chains: C,L
Fab Light Chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54319
95 % 1 1 32465 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 3 3 14846
70 % 1707 2454 2
50 % 4320 6341 1
40 % 4320 6341 1
30 % 4351 6387 1
Entity #2 | Chains: D,H
Fab Heavy chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54320
95 % 1 1 37716 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 18618
70 % 2068 3036 1
50 % 4321 6341 1
40 % 4321 6341 1
30 % 4352 6387 1
Entity #3 | Chains: A,E
T-cell surface glycoprotein CD8 alpha chain protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 6311
95 % 4 5 7446 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 4 5 7421
70 % 4 5 7086
50 % 4 5 6730
40 % 4 5 6508
30 % 4 5 6157
Entity #4 | Chains: B,F
T-cell surface glycoprotein CD8 beta chain protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23930
95 % 2 2 23813 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 2 2 23084
70 % 2 2 21143
50 % 2 2 18661
40 % 2 2 17158
30 % 2 2 15455

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures