Sequence Similarity Clusters for the Entities in PDB 3B6G

Entity #1 | Chains: I
147-MER DNA dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: J
147-MER DNA dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E
Histone H3.2 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 76 201
95 % 157 230 62 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 163 238 64
70 % 166 241 70
50 % 169 250 91
40 % 169 250 107
30 % 169 250 108
Entity #4 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 151 233 40
95 % 170 255 39 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.1
PDBFlex
90 % 177 264 38
70 % 178 263 49
50 % 178 263 84
40 % 178 263 101
30 % 178 263 101
Entity #5 | Chains: C,G
Histone H2A protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 71 118 111
95 % 144 234 61 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 142 220 69
70 % 145 226 76
50 % 145 226 100
40 % 145 226 120
30 % 145 226 123
Entity #6 | Chains: D,H
Histone H2B 1.1 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 83 194
95 % 71 112 169 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 145 225 68
70 % 153 236 72
50 % 157 242 95
40 % 157 242 113
30 % 157 242 114

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures