Sequence Similarity Clusters for the Entities in PDB 3B2U

Entity #1 | Chains: D,G,K,L,O,R,U,X
IMC-11F8 Fab Light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 5545
95 % 63 105 235 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.8
PDBFlex
90 % 135 235 78
70 % 1461 2368 2
50 % 1830 3003 2
40 % 1830 3003 2
30 % 3716 6095 1
Entity #2 | Chains: C,F,H,J,N,Q,T,W
IMC-11F8 Fab Heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 9234
95 % 1 3 6320 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 1.2
PDBFlex
90 % 26 43 621
70 % 1769 2903 1
50 % 1862 3048 1
40 % 1862 3048 1
30 % 3717 6095 1
Entity #3 | Chains: A,B,E,I,M,P,S,V
Epidermal growth factor receptor protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 3812
95 % 4 8 2709 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 4 8 2779
70 % 4 8 2839
50 % 4 8 2840
40 % 4 8 2843
30 % 4 8 2820

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures