Sequence Similarity Clusters for the Entities in PDB 3AVR

Entity #1 | Chains: A
Lysine-specific demethylase 6A protein, length: 531 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 18826
95 % 2 5 17217 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 5 16933
70 % 2 5 14858
50 % 2 5 14471
40 % 2 5 13451
30 % 2 5 11648
Entity #2 | Chains: B
Histone H3 protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 84279
95 % 1 1 58885
90 % 1 1 51875
70 % 1 1 42920
50 % 1 1 34523
40 % 1 1 37693
30 % 1 1 29545

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures