Sequence Similarity Clusters for the Entities in PDB 3AVM

Entity #1 | Chains: A,B
Integrase protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 80 211
95 % 66 171 132 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.9
PDBFlex
90 % 66 175 135
70 % 64 147 167
50 % 64 147 191
40 % 64 147 207
30 % 64 147 215
Entity #2 | Chains: D,F
LEDGF peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures