Sequence Similarity Clusters for the Entities in PDB 2ZY0

Entity #1 | Chains: A,C
Retinoic acid receptor RXR-alpha protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 62 361
95 % 59 72 430 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.1
PDBFlex
90 % 61 74 444
70 % 67 83 363
50 % 67 85 420
40 % 71 92 409
30 % 73 98 369
Entity #2 | Chains: B,D
GRIP1 from Nuclear receptor coactivator 2 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5MKU 1 A Retinoic acid receptor RXR-alpha 9606
2 1G2N 1 A ULTRASPIRACLE PROTEIN LIGAND BINDING DOMAIN 7102
3 6STI 1 A Retinoic acid receptor RXR-alpha 9606
4 2P1T 1 A Retinoic acid receptor RXR-alpha ligand binding domain (residues 223-462) 9606
5 4ZSH 1 A Retinoic acid receptor RXR-alpha Ligand binding domain residues 223 - 462 9606
6 3E94 1 A Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
7 1MZN 1 A, C, E, G RXR retinoid X receptor ligand binding domain(residues 223-462) 9606
8 5MJ5 1 A Retinoic acid receptor RXR-alpha 9606
9 5MK4 1 A, C Retinoic acid receptor RXR-alpha UNP residues 229-457 9606
10 1MV9 1 A RXR retinoid X receptor ligand binding domain(residues 223-462) 9606
11 1MVC 1 A RXR retinoid X receptor ligand binding domain(residues 223-462) 9606
12 4RMD 1 A Retinoic acid receptor RXR-alpha ligand binding domain 228-458 9606
13 5JI0 1 A Retinoic acid receptor RXR-alpha 9606
14 4N8R 1 A, B, C, D Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
15 3PCU 1 A Retinoic acid receptor RXR-alpha UNP residues 229-458 9606
16 3FUG 1 A Retinoic acid receptor RXR-alpha LIGAND BINDING DOMAIN (RESIDUES 223-462) 9606
17 4PP5 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
18 3OAP 1 A Retinoic acid receptor RXR-alpha hRXRalpha-LBD, UNP residues 228-458 9606
19 3FC6 1 A, C Retinoic acid receptor RXR-alpha 9606
20 4POJ 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
21 6A5Y 3 D Retinoic acid receptor RXR-alpha 9606
22 4N5G 1 A, B, C, D Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
23 1G5Y 1 A, B, C, D RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN (RESIDUES 225 - 462) 9606
24 4PP3 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
25 4K4J 1 A Retinoic acid receptor RXR-alpha ligand binding domain, UNP residues 228-458 9606
26 3FS1 1 A Hepatocyte nuclear factor 4-alpha HNF4a Ligand Binding Domain 9606
27 2P1V 1 A Retinoic acid receptor RXR-alpha ligand binding domain (residues 223-462) 9606
28 2P1U 1 A Retinoic acid receptor RXR-alpha ligand binding domain (residues 223-462) 9606
29 3KWY 1 A Retinoic acid receptor RXR-alpha ligand binding domain 9606
30 1PZL 1 A Hepatocyte nuclear factor 4-alpha HNF4A-LDB 9606
31 5LYQ 1 A Retinoic acid receptor RXR-alpha UNP residues 223-462 9606
32 1FM9 1 A RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN - RESIDUES 225 - 462 9606
33 3OZJ 1 A, C Retinoic acid receptor RXR-alpha ligand-binding domain, UNP residues 225-462 9606
34 4K6I 1 A Retinoic acid receptor RXR-alpha ligand binding domain, UNP residues 228-458 9606
35 4M8H 1 A Retinoic acid receptor RXR-alpha HRXRALPHA-LBD, UNP RESIDUES 228-458 9606
36 1FM6 1 A, U RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN - RESIDUES 225 -462 9606
37 3H0A 1 A Retinoic acid receptor RXR-alpha UNP RESIDUES 228-455 9606
38 4RME 1 A Retinoic acid receptor RXR-alpha ligand binding domain 228-458 9606
39 4POH 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
40 1FBY 1 A, B RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN 9606
41 4M8E 1 A Retinoic acid receptor RXR-alpha HRXRALPHA-LBD, UNP RESIDUES 228-458 9606
42 4RFW 1 A Retinoic acid receptor RXR-alpha ligand binding domain residues 228-458 9606
43 1XVP 1 A, C Retinoic acid receptor RXR-alpha LBD domain 9606
44 1XIU 1 A, B RXR-like protein Ligand-binding domain (LBD) 6526
45 5MKJ 1 A Retinoic acid receptor RXR-alpha 9606
46 3FAL 1 A, C Retinoic acid receptor RXR-alpha residues 225-462 9606
47 4OC7 1 A Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
48 1DKF 1 A PROTEIN (RETINOID X RECEPTOR-ALPHA) LIGAND-BINDING DOMAIN 10090
49 1K74 1 A Retinoic acid receptor RXR-alpha ligand binding domain - residues 225 - 462 9606
50 1RDT 1 A Retinoic acid receptor RXR-alpha ligand binding doamin 9606
51 6HN6 1 A Retinoic acid receptor RXR-alpha HISTIDINE TAG PLUS DOMAIN D PLUS LIGAND-BINDING DOMAIN E 9606
52 6SJM 1 A Retinoic acid receptor RXR-alpha 9606
53 1XV9 1 A, C Retinoic acid receptor RXR-alpha LBD domain 9606
54 5TBP 1 A, B, C, D Retinoic acid receptor RXR-alpha UNP residues 223-462 9606
55 2R40 2 A Ultraspiracle 7102
56 5KYA 2 B, F Retinoic acid receptor RXR-beta 9606
57 4RMC 1 A Retinoic acid receptor RXR-alpha ligand binding domain 228-458 9606
58 1G1U 1 A, B, C, D RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN (RESIDUES 225 - 462) 9606
59 5I4V 2 B, F Retinoic acid receptor RXR-beta,Nuclear receptor coactivator 2 9606
60 2GL8 1 A, B, C, D Retinoic acid receptor RXR-gamma 9606
61 1HG4 1 A, B, C, D, E, F ULTRASPIRACLE PHOSPHATIDIC ACID MODELLED IN LIGAND BINDING POCKET OF 6 PROTEIN MONOMERS LIGAND-BINDING DOMAIN RESIDUES 230-508 7227
62 5MMW 1 A Retinoic acid receptor RXR-alpha 9606
63 5ZQU 1 A, B, C, D Retinoic acid receptor RXR-alpha 9606
64 3A9E 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain 10090
65 3EYB 1 A, B, C, D Nuclear hormone receptor RXR UNP residues 266-484, Ligand binding domain 7739
66 5KYJ 2 B, F Retinoic acid receptor RXR-beta 9606
67 6JNO 1 A, B, C, D Retinoic acid receptor RXR-alpha 9606
68 5HJP 1 A, C Retinoic acid receptor RXR-beta 9606
69 2ACL 1 A, C, E, G Retinoic acid receptor RXR-alpha 9606
70 3UVV 2 B Retinoic acid receptor RXR-alpha ligand binding domain (UNP Residues 225-462) 9606
71 5Z12 2 B, C Retinoic acid receptor RXR-alpha UNP residues 228-458 9606
72 3IXP 1 A Gene regulation protein residues 3-264 7102
73 2ZY0 1 A, C Retinoic acid receptor RXR-alpha Ligand Binding Domain 9606
74 1LV2 1 A Hepatocyte nuclear factor 4-gamma HNF4g LBD (residues 103-328) 9606
75 2ZXZ 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain 9606
76 1UHL 1 A Retinoic acid receptor RXR-beta residues 298-533 9606
77 1Z5X 1 U Ultraspiracle protein (USP) a homologue of RXR 7038
78 1M7W 1 A, B, C, D Hepatocyte nuclear factor 4-alpha Residues 133-382 10117
79 3NSQ 1 A, B Retinoid X receptor, alpha ligand binding domain 9606
80 3NSP 1 A, B Retinoid X receptor, alpha ligand binding domain 9606
81 2NXX 1 A, B, C, D Ultraspiracle (USP, NR2B4) Ligand Binding Domain 7070
82 6A5Z 2 D, L Retinoic acid receptor RXR-alpha ligand binding domain 9606
83 4J5X 1 C, D Retinoic acid receptor RXR-alpha, Nuclear receptor coactivator 1 9606 2.3.1.48 | Details 4.2.99.18 | Details
84 3R5M 1 A, C Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
85 4J5W 2 C, D Retinoic acid receptor RXR-alpha, Nuclear receptor coactivator 1 9606 2.3.1.48 | Details
86 1R1K 2 A ULTRASPIRACLE PROTEIN 7102
87 3R29 1 A, B Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
88 6A60 3 D Retinoic acid receptor RXR-alpha 9606
89 1H9U 1 A, B, C, D RETINOID X RECEPTOR, BETA LIGAND BINDING DOMAIN RESIDUES 299-522 9606
90 1XDK 1 A, E Retinoic acid receptor RXR-alpha Ligand-Binding Domain 10090
91 1R20 1 A ULTRASPIRACLE PROTEIN 7102
92 1XLS 1 A, B, C, D Retinoic acid receptor RXR-alpha CAR LBD 9606
93 3R2A 1 A, B, C, D Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
94 2Q60 1 A, B, C, D Retinoid X receptor ligand binding domain 7723
95 4ZO1 3 B Retinoic acid receptor RXR-alpha ligand binding domain, unp residues 231-455 9606
96 4B7W 1 A, B, C, D HEPATOCYTE NUCLEAR FACTOR 4-ALPHA LIGAND BINDING DOMAIN, RESIDUES 142-377 9606
97 6CHT 1 A, B, D, E, G, H, J, K, M, N, P, Q, S, T, V, W Hepatocyte nuclear factor 4-alpha 9606
98 4UMM 5 F GENE REGULATION PROTEIN 7102