Sequence Similarity Clusters for the Entities in PDB 2ZNV

Entity #1 | Chains: A,D
AMSH-like protease protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52389
95 % 2 2 27561 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 2 26594
70 % 2 2 24152
50 % 2 3 7708
40 % 2 3 7428
30 % 2 3 6975
Entity #2 | Chains: B,E
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 20 1477
95 % 45 485 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 46 498 6
70 % 54 548 9
50 % 54 563 11
40 % 54 567 14
30 % 56 583 20
Entity #3 | Chains: C,F
Ubiquitin protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 387 4
95 % 46 485 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 47 498 6
70 % 55 548 9
50 % 55 563 11
40 % 55 567 14
30 % 57 583 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures