Sequence Similarity Clusters for the Entities in PDB 2YSU

Entity #1 | Chains: A
Vitamin B12 transporter btuB protein, length: 594 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 11981
95 % 12 12 6457 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.3
PDBFlex
90 % 12 12 6485
70 % 12 12 6385
50 % 12 12 6102
40 % 12 12 5925
30 % 12 12 5607
Entity #2 | Chains: B
Colicin-E2 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67180
95 % 1 1 53357
90 % 2 2 34812
70 % 2 2 31118
50 % 2 2 27115
40 % 2 2 24661
30 % 2 2 21883

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures