Sequence Similarity Clusters for the Entities in PDB 2YPL

Entity #1 | Chains: A
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 77168
95 % 39 42 1323 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 204 241 150
70 % 583 835 6
50 % 590 849 7
40 % 638 906 8
30 % 644 931 13
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 535 743 2
95 % 568 792 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 578 810 3
70 % 752 1114 4
50 % 766 1138 3
40 % 766 1138 4
30 % 766 1138 10
Entity #3 | Chains: C
KF11 P24 GAG PEPTIDE protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
AGA T-CELL RECEPTOR ALPHA CHAIN protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77166
95 % 1 1 47525
90 % 1 2 34017
70 % 130 284 94
50 % 176 410 66
40 % 176 410 82
30 % 176 410 87
Entity #5 | Chains: E
AGA T-CELL RECEPTOR BETA CHAIN protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77167
95 % 1 1 61618
90 % 10 19 2969
70 % 177 407 29
50 % 181 423 59
40 % 181 423 75
30 % 181 423 82

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures