Sequence Similarity Clusters for the Entities in PDB 2YPG

Entity #1 | Chains: A,C,E
HEMAGGLUTININ HA1 CHAIN protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 14 1425
95 % 19 49 287 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 21 53 284
70 % 47 96 181
50 % 58 108 192
40 % 163 376 13
30 % 163 376 22
Entity #2 | Chains: B,D,F
HEMAGGLUTININ HA2 CHAIN protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 18 987
95 % 41 71 249 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 1.0
PDBFlex
90 % 44 89 201
70 % 55 101 180
50 % 159 362 13
40 % 159 362 19
30 % 162 373 23

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures