Sequence Similarity Clusters for the Entities in PDB 2YMB

Entity #1 | Chains: A,B,C,D
MIT DOMAIN-CONTAINING PROTEIN 1 protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30316
95 % 1 1 24576 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 1 24697
70 % 1 1 22490
50 % 1 1 19816
40 % 1 1 18171
30 % 1 1 14659
Entity #2 | Chains: F,H
CHARGED MULTIVESICULAR BODY PROTEIN 1A protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures