2YKM

Crystal structure of HIV-1 Reverse Transcriptase (RT) in complex with a Difluoromethylbenzoxazole (DFMB) Pyrimidine Thioether derivative, a non-nucleoside RT inhibitor (NNRTI)


Sequence Similarity Clusters for the Entities in PDB 2YKM

Entity #1 | Chains: A
REVERSE TRANSCRIPTASE/RIBONUCLEASE H protein, length: 562 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76201
95 % 199 305 106
90 % 199 305 115
70 % 199 305 126
50 % 200 306 141
40 % 200 307 159
30 % 200 307 165
Entity #2 | Chains: B
REVERSE TRANSCRIPTASE/RIBONUCLEASE H protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 78 132 212
95 % 194 299 114
90 % 194 299 121
70 % 194 299 133
50 % 195 300 150
40 % 195 301 166
30 % 195 301 173

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures