Sequence Similarity Clusters for the Entities in PDB 2Y5T

Entity #1 | Chains: A
CIIC1 FAB FRAGMENT HEAVY CHAIN protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 33437
95 % 1 2 25725 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 1 2 24898
70 % 916 2943 1
50 % 974 3094 1
40 % 974 3094 1
30 % 1925 6183 1
Entity #2 | Chains: B
CIIC1 FAB FRAGMENT LIGHT CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30291
95 % 11 40 950 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 27 120 152
70 % 738 2399 2
50 % 938 3045 2
40 % 938 3045 2
30 % 1926 6183 1
Entity #3 | Chains: E,G
C1 protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 8195
95 % 1 2 8105
90 % 1 2 8053
70 % 1 2 7849
50 % 1 2 7653
40 % 1 2 7358
30 % 1 2 6929
Entity #4 | Chains: F
C1 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59757
95 % 1 1 50589
90 % 1 1 47931
70 % 2 3 12283
50 % 2 6 5031
40 % 2 6 4901
30 % 2 6 4728

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures