2XV6

Crystal structure of the HIV-1 capsid protein C-terminal domain (146- 220) in complex with a camelid VHH.


Sequence Similarity Clusters for the Entities in PDB 2XV6

Entity #1 | Chains: A,C
CAPSID PROTEIN P24 protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 250
95 % 3 24 315
90 % 3 23 336
70 % 3 24 373
50 % 3 24 444
40 % 3 25 457
30 % 3 25 480
Entity #2 | Chains: B,D
CAMELID VHH 9 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 18971
95 % 4 4 18095
90 % 4 4 17435
70 % 139 627 7
50 % 189 910 5
40 % 189 927 6
30 % 270 1364 5

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures