Sequence Similarity Clusters for the Entities in PDB 2XPX

Entity #1 | Chains: A
APOPTOSIS REGULATOR BHRF1 protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 15634
95 % 3 5 15183 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 3 5 14662
70 % 3 5 13840
50 % 3 5 12564
40 % 3 5 11717
30 % 3 5 10855
Entity #2 | Chains: B
BCL-2 HOMOLOGOUS ANTAGONIST/KILLER protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 8827
95 % 1 4 9363 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 1 5 7798
70 % 2 6 7166
50 % 2 6 6772
40 % 2 6 6547
30 % 2 6 6121

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures