Sequence Similarity Clusters for the Entities in PDB 2VXT

Entity #1 | Chains: H
MURINE IGG 125-2H protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 34404
95 % 1 2 27326 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 1 2 26336
70 % 33 2922 1
50 % 38 3059 1
40 % 38 3072 1
30 % 73 6138 1
Entity #2 | Chains: I
INTERLEUKIN-18 protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40547
95 % 1 13 2666 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.9
PDBFlex
90 % 1 13 2729
70 % 1 13 2764
50 % 1 13 2759
40 % 1 13 2772
30 % 1 13 2748
Entity #3 | Chains: L
MURINE IGG 125-2H protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 34403
95 % 1 7 9004 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 1 13 2716
70 % 27 2383 2
50 % 33 3022 2
40 % 33 3022 2
30 % 74 6138 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures