Sequence Similarity Clusters for the Entities in PDB 2VPE

Entity #1 | Chains: A,C
PYGOPUS HOMOLOG 1 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 20048
95 % 2 2 18542 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 3 7 7012
70 % 3 7 6883
50 % 3 7 6627
40 % 3 7 6424
30 % 3 7 6071
Entity #2 | Chains: B,D
B-CELL CLL/LYMPHOMA 9 PROTEIN protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26595
95 % 2 2 19062 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 5 11195
70 % 3 5 11210
50 % 3 5 9851
40 % 3 5 9219
30 % 3 5 8568
Entity #3 | Chains: P,R
HISTONE H3 TAIL protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures