Sequence Similarity Clusters for the Entities in PDB 2VNT

Entity #1 | Chains: A,B,C,D,E,F
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 5194
95 % 121 134 320 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.5
PDBFlex
90 % 121 134 331
70 % 123 141 345
50 % 123 141 411
40 % 128 160 373
30 % 1681 1979 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures