Sequence Similarity Clusters for the Entities in PDB 2VIP

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR CHAIN B protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 2878
95 % 25 134 299 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.5
PDBFlex
90 % 25 134 315
70 % 25 141 335
50 % 25 141 397
40 % 25 157 373
30 % 577 1940 5

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures