2SEM

SEM5 SH3 DOMAIN COMPLEXED WITH PEPTOID INHIBITOR


Sequence Similarity Clusters for the Entities in PDB 2SEM

Entity #1 | Chains: A,B
PROTEIN (SEX MUSCLE ABNORMAL PROTEIN 5) protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 17771
95 % 2 5 12850
90 % 2 5 12675
70 % 2 5 12045
50 % 2 5 10996
40 % 5 12 5054
30 % 127 232 185
Entity #2 | Chains: C,D
PROTEIN (SH3 PEPTOID INHIBITOR) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5QU2 1 A, B Cytoplasmic protein NCK1 9606
2 1JO8 1 A ACTIN BINDING PROTEIN SH3 domain 4932
3 1UJ0 1 A signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 RESIDUES 200-261 10090
4 1SEM 1 A, B SEM-5 6239
5 2SEM 1 A, B PROTEIN (SEX MUSCLE ABNORMAL PROTEIN 5) C-TERMINAL SH3 6239
6 3SEM 1 A, B SEX MUSCLE ABNORMAL PROTEIN 5 C-TERMINAL SH3 6239
7 2RPN 1 A Actin-binding protein SH3 domain 4932
8 2K3B 1 A Actin-binding protein SH3 domain 559292
9 2JS2 1 A Cytoplasmic protein NCK1 SH3 1 9606
10 2B86 1 A Cytoplasmic protein NCK2 First SH3 domain, residues 1-59 9606
11 1KFZ 1 A SEX MUSCLE ABNORMAL PROTEIN 5 C-TERMINAL SH3 Domain (RESIDUES 155-214) 6239
12 1K76 1 A SEX MUSCLE ABNORMAL PROTEIN 5 SH3 domain (Residues 155-214) 6239