Sequence Similarity Clusters for the Entities in PDB 2RAM

Entity #1 | Chains: C,D
DNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*(5IU)P*(5IU)P*CP*CP*AP*GP*CP*CP*G)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
PROTEIN (TRANSCRIPTION FACTOR NF-KB P65) protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 3040
95 % 2 11 3458 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 4.1
PDBFlex
90 % 2 11 3616
70 % 2 11 3623
50 % 2 14 2846
40 % 3 17 2471
30 % 3 17 2452

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures