Sequence Similarity Clusters for the Entities in PDB 2R92

Entity #1 | Chains: P
RNA (5'-R(*UP*GP*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 64 184 185
95 % 65 185 239 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 65 185 247
70 % 65 185 288
50 % 66 204 297
40 % 66 204 308
30 % 66 220 280
Entity #11 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 133 274
95 % 61 133 371 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.0
PDBFlex
90 % 61 133 387
70 % 62 152 348
50 % 62 154 400
40 % 62 154 423
30 % 62 169 400
Entity #12 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 184 186
95 % 65 184 242 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 65 184 249
70 % 66 220 228
50 % 66 220 242
40 % 66 220 254
30 % 66 220 274
Entity #13 | Chains: K
DNA-directed RNA polymerase II subunit RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 134 273
95 % 61 134 369 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 61 134 382
70 % 61 134 415
50 % 62 153 410
40 % 62 155 421
30 % 62 155 442
Entity #14 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 63 180 192
95 % 63 180 249 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 63 180 256
70 % 63 180 294
50 % 64 199 309
40 % 64 199 322
30 % 64 199 343
Entity #2 | Chains: T
RNA (5'-R(*CP*UP*UP*GP*AP*CP*GP*CP*CP*UP*GP*GP*UP*CP*AP*AP*A)-3') rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 132 280
95 % 61 132 376 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.6
PDBFlex
90 % 61 132 391
70 % 62 151 351
50 % 62 153 403
40 % 62 153 427
30 % 62 153 448
Entity #4 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 133 276
95 % 61 134 364 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.2
PDBFlex
90 % 61 134 378
70 % 62 155 341
50 % 62 170 368
40 % 63 178 357
30 % 63 193 350
Entity #5 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 129 294
95 % 59 129 392 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 59 129 404
70 % 59 129 433
50 % 59 129 475
40 % 59 131 494
30 % 59 131 525
Entity #6 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 70 620
95 % 30 70 837 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.8
PDBFlex
90 % 30 70 869
70 % 30 71 899
50 % 30 71 926
40 % 30 71 961
30 % 30 71 1008
Entity #7 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 185 182
95 % 66 185 240 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 66 185 248
70 % 67 204 263
50 % 67 206 288
40 % 67 221 251
30 % 67 221 270
Entity #8 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 63 179 193
95 % 63 179 250 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 63 179 257
70 % 63 179 295
50 % 64 200 304
40 % 64 200 315
30 % 64 200 338
Entity #9 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 73 574
95 % 31 73 780 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 31 73 820
70 % 31 73 853
50 % 33 110 525
40 % 33 110 559
30 % 33 110 584

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures