Sequence Similarity Clusters for the Entities in PDB 2QQL

Entity #1 | Chains: A
Neuropilin-2 protein, length: 579 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47648
95 % 2 2 36843 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.9
PDBFlex
90 % 2 2 35164
70 % 2 2 31366
50 % 3 4 15714
40 % 3 4 14583
30 % 3 4 13238
Entity #2 | Chains: H
Antibody Heavy Chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47649
95 % 2 2 36844 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 234 322 19
70 % 1987 2903 1
50 % 2090 3048 1
40 % 2090 3048 1
30 % 4175 6095 1
Entity #3 | Chains: L
Antibody Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47650
95 % 134 210 78 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 350 530 4
70 % 1652 2368 2
50 % 2057 3003 2
40 % 2057 3003 2
30 % 4176 6095 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures