Sequence Similarity Clusters for the Entities in PDB 2QMC

Entity #1 | Chains: A,C
Gamma-glutamyltranspeptidase protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 12106
95 % 3 5 8976 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 5 8929
70 % 3 5 8666
50 % 3 15 2563
40 % 3 16 2409
30 % 3 25 1818
Entity #2 | Chains: B,D
Gamma-glutamyltranspeptidase protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 12107
95 % 2 4 11707 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 4 11577
70 % 2 4 11053
50 % 2 15 2579
40 % 2 15 2595
30 % 4 35 1430

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures