Sequence Similarity Clusters for the Entities in PDB 2Q0O

Entity #1 | Chains: A,B
Probable transcriptional activator protein traR protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57177
95 % 1 1 41563 Flexibility: High
Max RMSD: 11.7, Avg RMSD: 11.7
PDBFlex
90 % 1 1 39575
70 % 1 1 35091
50 % 1 1 30424
40 % 1 1 27617
30 % 1 1 24480
Entity #2 | Chains: C,D
Probable transcriptional repressor traM protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57176
95 % 1 1 41562 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 39574
70 % 1 1 35090
50 % 1 1 30423
40 % 1 1 27616
30 % 1 1 24479

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures