Sequence Similarity Clusters for the Entities in PDB 2PVP

Entity #1 | Chains: A,B
D-alanine-D-alanine ligase protein, length: 367 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44472
95 % 1 1 43461 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 1 1 37861
70 % 1 1 35690
50 % 1 1 30920
40 % 1 1 28056
30 % 1 1 23561

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures