Sequence Similarity Clusters for the Entities in PDB 2PO6

Entity #1 | Chains: A,E
T-cell surface glycoprotein CD1d protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 4692
95 % 13 13 4094 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 15 15 3589
70 % 15 15 3579
50 % 131 136 365
40 % 131 136 382
30 % 133 138 388
Entity #2 | Chains: B,F
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 660 692 2
95 % 707 740 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 724 757 3
70 % 1010 1055 4
50 % 1030 1079 4
40 % 1030 1079 4
30 % 1030 1079 8
Entity #3 | Chains: C,G
NKT15 alpha-chain protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 4303
95 % 10 11 4080 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 10 11 4149
70 % 78 85 482
50 % 357 392 76
40 % 357 392 91
30 % 357 392 90
Entity #4 | Chains: D,H
NKT15 beta-chain protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 9030
95 % 16 17 2624 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 16 17 2730
70 % 355 388 42
50 % 364 401 63
40 % 364 401 81
30 % 364 401 84

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures