Sequence Similarity Clusters for the Entities in PDB 2PM9

Entity #1 | Chains: A
Protein transport protein SEC31 protein, length: 416 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73404
95 % 1 1 53172
90 % 1 1 49534
70 % 1 1 43372
50 % 1 1 37492
40 % 1 1 33876
30 % 1 1 29874
Entity #2 | Chains: B
Protein transport protein SEC13 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16737
95 % 6 12 3722 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 6 12 3796
70 % 6 12 3575
50 % 8 15 2137
40 % 8 15 2245
30 % 8 15 2234

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures