Sequence Similarity Clusters for the Entities in PDB 2PGH

Entity #1 | Chains: A,C
HEMOGLOBIN (AQUO MET) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 11549
95 % 2 3 9990 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 3 9917
70 % 246 340 22
50 % 549 735 7
40 % 549 735 7
30 % 595 783 10
Entity #2 | Chains: B,D
HEMOGLOBIN (AQUO MET) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24850
95 % 2 3 10728 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 3 10630
70 % 265 353 17
50 % 550 735 7
40 % 550 735 7
30 % 596 783 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures