Sequence Similarity Clusters for the Entities in PDB 2PF4

Entity #1 | Chains: A,B,C,D
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform protein, length: 589 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 11690
95 % 10 16 2090 Flexibility: Medium
Max RMSD: 9.9, Avg RMSD: 4.3
PDBFlex
90 % 10 16 2150
70 % 10 16 2207
50 % 10 16 2240
40 % 10 16 2264
30 % 10 16 2252
Entity #2 | Chains: E,F,G,H
Small T antigen protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 25075
95 % 1 1 21958 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 1 1 21394
70 % 1 1 17949
50 % 1 1 16262
40 % 1 1 15035
30 % 1 1 13538

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures