Sequence Similarity Clusters for the Entities in PDB 2P1L

Entity #1 | Chains: A,C,E,G
Apoptosis regulator Bcl-X protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 23 824
95 % 24 25 1049 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.9
PDBFlex
90 % 25 26 1041
70 % 25 26 1064
50 % 30 31 1015
40 % 30 31 1059
30 % 82 100 246
Entity #2 | Chains: B,D,F,H
Beclin 1 protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20954
95 % 1 1 18062 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 18725
70 % 1 1 17374
50 % 1 1 15530
40 % 1 1 14391
30 % 1 1 12538

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5W89 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 UNP residues 172-321 9606
2 5C3F 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 9606
3 6QGG 1 A Apoptosis regulator Bcl-2,Bcl-2-like protein 1,Apoptosis regulator Bcl-2,Bcl-2-like protein 1 9606
4 4HW4 1 A, B Induced myeloid leukemia cell differentiation protein Mcl-1 9606
5 5FC4 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 unp residues 172-320 9606
6 4A1U 1 A BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
7 6OQD 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 residues 171-327 9606
8 2NL9 1 A FUSION PROTEIN CONSISTING OF Induced myeloid leukemia cell differentiation protein Mcl-1 homolog residues 171-208 and residues 209-327 10090
9 6OQB 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 residues 171-327 9606
10 6P3P 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 9606
11 6FS1 1 A, B Induced myeloid leukemia cell differentiation protein Mcl-1 9606
12 4BPJ 1 A FUSION PROTEIN CONSISTING OF INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 HOMOLOG FUSION PROTEIN OF MOUSE MCL-1, RESIDUES 152-189 AND HUMAN MCL-1 RESIDUES, 209-327 10090
13 6FBX 1 A BCL2-like 10 7955
14 5FMK 1 A BCL-XL UNP RESIDUES 1-26,83-209 9606
15 4WMR 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 9606
16 6QFQ 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 9606
17 6O6F 1 A, B Induced myeloid leukemia cell differentiation protein Mcl-1 residues 172-327 9606
18 3KJ0 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 (UNP 172-326) 9606
19 3FDL 1 A Apoptosis regulator Bcl-X residue 1-209, Deletion of amino acids 27 to 82 9606
20 6QGK 1 A Apoptosis regulator Bcl-2,Bcl-2-like protein 1,Apoptosis regulator Bcl-2,Bcl-2-like protein 1 9606
21 2YQ6 1 A BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
22 4TUH 1 A, B, C, D, E, F, G, H Bcl-2-like protein 1 UNP residues 1-26, 83-209 9606
23 5VX2 1 A, C Induced myeloid leukemia cell differentiation protein Mcl-1 homolog,Induced myeloid leukemia cell differentiation protein Mcl-1 chimera UNP P97287 residues 152-189, UNP Q07820 residues 209-327 10090
24 6NE5 1 A, B, C, D Induced myeloid leukemia cell differentiation protein Mcl-1 9606
25 2YQ7 1 A BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
26 6OQC 1 A, B Induced myeloid leukemia cell differentiation protein Mcl-1 residues 171-327 9606
27 6QG8 1 A Apoptosis regulator Bcl-2,Bcl-2-like protein 1,Apoptosis regulator Bcl-2,Bcl-2-like protein 1 9606
28 4OQ6 1 A, B Induced myeloid leukemia cell differentiation protein Mcl-1 9606
29 4BPK 1 A, B BCL-2-LIKE PROTEIN 1 BCL-XL WITHOUT C-TERMINAL DOMAIN OR LOOP BETWEEN ALPHA 1 AND ALPHA 2 HELICES RESIDUES 1-26,83-209 9606
30 3ZLR 1 A, B BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
31 4C52 1 A, B BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
32 3KJ1 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 (UNP 172-322) 9606
33 6QGJ 1 A Apoptosis regulator Bcl-2,Bcl-2-like protein 1,Apoptosis regulator Bcl-2,Bcl-2-like protein 1 9606
34 6QGH 1 A Apoptosis regulator Bcl-2,Bcl-2-like protein 1,Apoptosis regulator Bcl-2,Bcl-2-like protein 1 9606
35 5VX3 1 A, C, E, G Bcl-2-like protein 1 UNP residues 1-26 and 83-209 9606
36 6MBD 1 A, B Induced myeloid leukemia cell differentiation protein Mcl-1 9606
37 6OQN 1 A, B Induced myeloid leukemia cell differentiation protein Mcl-1 residues 171-327 9606
38 6H1N 1 A BCL2-like 10 (Apoptosis facilitator) 7955
39 4G35 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 homolog residues 152-308 10090
40 2PQK 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 residues 172-327 9606
41 3INQ 1 A, B Bcl-2-like protein 1 residues 1-209 9606
42 3R85 1 A, B, C, D Bcl-2-like protein 1 residues 1-209 with the deletion of residues 27-82 9606
43 3D7V 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 FUSION PROTEIN CONSISTS OF THE N-TERMINAL EXPRESSION TAGS (GPLGS), RESIDUES 171-208 (UNIPROT RESIDUES 152-189) FROM INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 HOMOLOG (MOUSE) AND RESIDUES 209-327 FROM INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 (HUMAN) Bcl-2 like domain, Myeloid Cell Leukemia 1 10090
44 5W8F 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 UNP residues 172-320 9606
45 6QFM 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 9606
46 6B4U 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 9606
47 4Z9V 1 A, B Bcl-2-like protein 1,APOPTOSIS REGULATOR BCL-XL 9606
48 4BPI 1 A FUSION PROTEIN CONSISTING OF INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 HOMOLOG FUSION PROTEIN OF MOUSE MCL-1, RESIDUES 152-189 AND HUMAN MCL-1, RESIDUES 209-327 10090
49 4QVX 1 A, B Bcl-2-like protein 1 SEE REMARK 999 9606
50 3WIX 1 A, B, C, D Induced myeloid leukemia cell differentiation protein Mcl-1 UNP RESIDUES 172-327 9606
51 4ZBF 1 A, B, C, D, E, F, G, H, I, J, K, L Induced myeloid leukemia cell differentiation protein Mcl-1 unp residues 172-327 9606
52 3FDM 1 A, B, C Apoptosis regulator Bcl-X residue 1-209, Deletion of amino acids 27 to 82 9606
53 4C5D 1 A, B BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
54 5KU9 1 A, B Induced myeloid leukemia cell differentiation protein Mcl-1 10090 3.6.1.11 | Details
55 5MES 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 homolog,Induced myeloid leukemia cell differentiation protein Mcl-1 10090
56 5B1Z 1 A, B Bcl-2-like protein 1 UNP residues 1-209, with deletion of residues 27-82 9606
57 5IF4 1 A, B Induced myeloid leukemia cell differentiation protein Mcl-1 unp residues 172-327 9606
58 2YJ1 1 A, C BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
59 3WIY 1 A, B, C, D, E, F Induced myeloid leukemia cell differentiation protein Mcl-1 UNP RESIDUES 172-327 9606
60 6DCO 1 A, B Bcl-2-like protein 1,Bcl-2-like protein 1 9606
61 6FS0 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 9606
62 6MBE 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 9606
63 3IO8 1 A, C Bcl-2-like protein 1 residues 1-26, and residues 83-209 9606
64 5VKC 1 A, B Induced myeloid leukemia cell differentiation protein Mcl-1 9606
65 5FMJ 1 A BCL-2-LIKE PROTEIN 1 DELETION OF RESIDUES 27-82 UNP RESIDUES 1-26,83-209 9606
66 6QFI 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 9606
67 6B4L 1 A, B Induced myeloid leukemia cell differentiation protein Mcl-1 unp residues 174-326 9606
68 6DCN 1 A, B BCL-xl protein 9606
69 4ZBI 1 A, B, C, D, E, F, G, H, I, J, K, L Induced myeloid leukemia cell differentiation protein Mcl-1 9606
70 3KJ2 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 (UNP 172-322) 9606
71 5UUM 1 A, B Induced myeloid leukemia cell differentiation protein Mcl-1 UNP residues 172-325 9606
72 3IO9 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 Fusion protein of mouse Mcl-1 residues 152-189 and human Mcl-1 residues 209-327 10090
73 3KZ0 1 A, B Induced myeloid leukemia cell differentiation protein Mcl-1 human MCL-1 9606
74 4HW3 1 A, B, C, D, E, F, G, H, I, J, K, L Induced myeloid leukemia cell differentiation protein Mcl-1 9606
75 6FS2 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 9606
76 6FS2 2 B Induced myeloid leukemia cell differentiation protein Mcl-1 9606
77 4A1W 1 A, B, C, D BCL-2-LIKE PROTEIN 1 9606
78 3MK8 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 MCL-1, residues 172-327 9606
79 5C6H 1 A, C, E, G, I, K, M, O, Q, S, U, W Induced myeloid leukemia cell differentiation protein Mcl-1 Mcl-1, residues 171-327 UNP residues 171-327 9606
80 5IEZ 1 A, B, C, D Induced myeloid leukemia cell differentiation protein Mcl-1 unp residues 172-327 9606
81 5C3G 1 A Bcl-2-like protein 1,Bcl-2-like protein 1 Deletion mutation performed to remove flexible loop, removing residues 27-82. Numbering is correct in the pdb file. UNP residues 1-26,UNP residues 83-209 10090
82 2P1L 1 A, C, E, G Apoptosis regulator Bcl-X Bcl-XL Delta-loop 9606
83 4CIN 1 A, B BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
84 5JSB 1 A, C, E, G, I, K Induced myeloid leukemia cell differentiation protein Mcl-1 9606
85 5FDR 1 A, B, C, D Induced myeloid leukemia cell differentiation protein Mcl-1 9606
86 4OQ5 1 A, B, C, D, E, F Induced myeloid leukemia cell differentiation protein Mcl-1 UNP residues 174-326 9606
87 2NLA 1 A FUSION PROTEIN CONSISTING OF Induced myeloid leukemia cell differentiation protein Mcl-1 homolog residues 171-208 and residues 209-327 10090
88 4HW2 1 A, B, C, D, E, F Induced myeloid leukemia cell differentiation protein Mcl-1 9606
89 5FDO 1 A, B, C, D Induced myeloid leukemia cell differentiation protein Mcl-1 unp residues 172-320 9606
90 6O6G 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 residues 172-327 9606
91 6BW2 1 A, B, C, D Induced myeloid leukemia cell differentiation protein Mcl-1 9606
92 5MEV 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 homolog,Induced myeloid leukemia cell differentiation protein Mcl-1 10090
93 6BW8 1 A, B, C, D Induced myeloid leukemia cell differentiation protein Mcl-1 9606
94 6OVC 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 9606
95 2MHS 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 UNP residues 171-327 9606
96 2KBW 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 residues 167-326 9606
97 2ROC 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 homolog residues 152-308 10090
98 2ROD 1 A Induced myeloid leukemia cell differentiation protein Mcl-1 homolog residues 152-308 10090
99 2JM6 2 B Myeloid cell leukemia-1 protein Mcl-1 homolog residues 152-308 10090
100 1WSX 1 A myeloid cell leukemia sequence 1 residues 152-308 10090