Sequence Similarity Clusters for the Entities in PDB 2P1L

Entity #1 | Chains: A,C,E,G
Apoptosis regulator Bcl-X protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 23 824
95 % 24 25 1049 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.9
PDBFlex
90 % 25 26 1041
70 % 25 26 1064
50 % 30 31 1015
40 % 30 31 1059
30 % 82 100 246
Entity #2 | Chains: B,D,F,H
Beclin 1 protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20954
95 % 1 1 18062 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 18725
70 % 1 1 17374
50 % 1 1 15530
40 % 1 1 14391
30 % 1 1 12538

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4A1U 1 A BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
2 3FDL 1 A Apoptosis regulator Bcl-X residue 1-209, Deletion of amino acids 27 to 82 9606
3 2YQ6 1 A BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
4 4TUH 1 A, B, C, D, E, F, G, H Bcl-2-like protein 1 UNP residues 1-26, 83-209 9606
5 2YQ7 1 A BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
6 3ZLR 1 A, B BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
7 4C52 1 A, B BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
8 5VX3 1 A, C, E, G Bcl-2-like protein 1 UNP residues 1-26 and 83-209 9606
9 3INQ 1 A, B Bcl-2-like protein 1 residues 1-209 9606
10 3R85 1 A, B, C, D Bcl-2-like protein 1 residues 1-209 with the deletion of residues 27-82 9606
11 4Z9V 1 A, B Bcl-2-like protein 1,APOPTOSIS REGULATOR BCL-XL 9606
12 3FDM 1 A, B, C Apoptosis regulator Bcl-X residue 1-209, Deletion of amino acids 27 to 82 9606
13 4C5D 1 A, B BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
14 5B1Z 1 A, B Bcl-2-like protein 1 UNP residues 1-209, with deletion of residues 27-82 9606
15 2YJ1 1 A, C BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606
16 6DCO 1 A, B Bcl-2-like protein 1,Bcl-2-like protein 1 9606
17 3IO8 1 A, C Bcl-2-like protein 1 residues 1-26, and residues 83-209 9606
18 5FMJ 1 A BCL-2-LIKE PROTEIN 1 DELETION OF RESIDUES 27-82 UNP RESIDUES 1-26,83-209 9606
19 6DCN 1 A, B BCL-xl protein 9606
20 4A1W 1 A, B, C, D BCL-2-LIKE PROTEIN 1 9606
21 5C3G 1 A Bcl-2-like protein 1,Bcl-2-like protein 1 Deletion mutation performed to remove flexible loop, removing residues 27-82. Numbering is correct in the pdb file. UNP residues 1-26,UNP residues 83-209 10090
22 2P1L 1 A, C, E, G Apoptosis regulator Bcl-X Bcl-XL Delta-loop 9606
23 4CIN 1 A, B BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 9606