Sequence Similarity Clusters for the Entities in PDB 2O61

Entity #1 | Chains: E
36-MER dna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
34-MER dna, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Transcription factor p65/Interferon regulatory factor 7/Interferon regulatory factor 3 fusion protein protein, length: 540 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64715
95 % 1 1 47268
90 % 1 1 44809
70 % 1 1 39541
50 % 1 1 34213
40 % 1 1 30908
30 % 1 1 27318
Entity #4 | Chains: B
Nuclear factor NF-kappa-B p105 subunit protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64717
95 % 6 10 4534 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.6
PDBFlex
90 % 6 10 4502
70 % 6 10 4542
50 % 7 13 3507
40 % 6 10 4235
30 % 6 10 4212

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures