Sequence Similarity Clusters for the Entities in PDB 2O4I

Entity #1 | Chains: C,D
5'-D(*GP*CP*TP*AP*GP*GP*CP*AP*GP*GP*AP*AP*CP*CP*CP*CP*TP*CP*CP*TP*CP*CP*CP*CP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Three prime repair exonuclease 1 protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49783
95 % 14 14 1750 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 14 14 1797
70 % 10 10 2591
50 % 10 10 2635
40 % 19 19 1382
30 % 19 19 1414

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3MXM 1 A, B Three prime repair exonuclease 1 N-terminal fragment, residues 1-242 10090 3.1.11.2 | Details
2 5YWT 1 A, B Three-prime repair exonuclease 1 10090 3.1.11.2 | Details
3 6A47 1 A, B Three prime repair exonuclease 2 10090 3.1.11.2 | Details
4 6A45 1 A, B Three prime repair exonuclease 2 10090 3.1.11.2 | Details
5 5YWS 1 A, B Three-prime repair exonuclease 1 10090 3.1.11.2 | Details
6 3MXJ 1 A, B Three prime repair exonuclease 1 N-terminal fragment, residues 1-242 10090 3.1.11.2 | Details
7 6A46 1 A, B Three prime repair exonuclease 2 10090 3.1.11.2 | Details
8 2OA8 2 A, B Three prime repair exonuclease 1 N-terminal fragment, residues 5-234 10090 3.1.11.2 | Details
9 2IOC 1 A, B Three prime repair exonuclease 1 N-terminal fragment, residues 1-242 10090 3.1.11.2 | Details
10 5YWV 1 A, B Three-prime repair exonuclease 1 10090 3.1.11.2 | Details
11 3B6O 1 A, B, C, D Three prime repair exonuclease 1 TREX1 exonuclease, UNP residues 9-245 10090 3.1.11.2 | Details
12 2O4G 1 A, B, C, D Three prime repair exonuclease 1 TREX1 exonuclease 10090 3.1.11.2 | Details
13 1Y97 1 A, B Three prime repair exonuclease 2 TREX2 exonuclease 9606 3.1.11.2 | Details
14 3B6P 1 A, B, C, D Three prime repair exonuclease 1 TREX1 exonuclease, UNP residues 9-245 10090 3.1.11.2 | Details
15 3MXI 1 A, B Three prime repair exonuclease 1 N-terminal fragment, residues 1-242 10090 3.1.11.2 | Details
16 6A4B 1 A, B, C, D, E, F Three prime repair exonuclease 2 10090 3.1.11.2 | Details
17 4YNQ 1 A, B, C, D Three-prime repair exonuclease 1 catalytic domain, UNP residues 5-235 10090 3.1.11.2 | Details
18 5YWU 1 A, B Three-prime repair exonuclease 1 10090 3.1.11.2 | Details
19 2O4I 2 A, B Three prime repair exonuclease 1 TREX1 exonuclease 10090 3.1.11.2 | Details